PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G020700.1
Common NameB456_010G020700, LOC105774501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 325aa    MW: 36932.5 Da    PI: 7.5378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G020700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkkg+k+
  Gorai.010G020700.1  25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFKKGEKH 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.010G020700.1 107 LLCEIHRRKTA 117
                         ********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.69E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKP VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEYF KKGEKHLLCE IHRRKTAQPQ  120
VTAALNHYNH HHRHLHPQSP MVNNTHYGYL PFPSRVSISP PDSDEQTTNW CDSPPLSSTT  180
GGGGSYNNSS VTALSEDNER LRRSNNLLIS ELAHMKKLYN DIIYFVQNHV KPVTPSNSYS  240
PSLLLCAPNQ HHFGYYPNSP TPQVQVLNEE PNNNKTKLFG VPLQSKKRLH PEYGGSTAAN  300
METHKARLVL EKDDIGLNLM PSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-222111717123Heat shock factor protein 1
5d5v_D5e-222111626131Heat shock factor protein 1
5d5v_B5e-222111626131Heat shock factor protein 1
5d5u_B5e-222111626131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674110.0KR067411.1 Gossypium hirsutum HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452467.10.0PREDICTED: heat stress transcription factor B-4-like isoform X1
SwissprotQ9C6351e-111HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0D2V4C30.0A0A0D2V4C3_G
STRINGPOPTR_0002s12640.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-110heat shock transcription factor B4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]